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Performing pathway enrichment with non-human species - Basepair
Performing pathway enrichment with non-human species - Basepair

Integrative differential expression and gene set enrichment analysis using  summary statistics for scRNA-seq studies | Nature Communications
Integrative differential expression and gene set enrichment analysis using summary statistics for scRNA-seq studies | Nature Communications

Genomic responses in mouse models greatly mimic human inflammatory diseases  | PNAS
Genomic responses in mouse models greatly mimic human inflammatory diseases | PNAS

Growth Factor Independence 1b (Gfi1b) Is Important for the Maturation of  Erythroid Cells and the Regulation of Embryonic Globin Expression | PLOS ONE
Growth Factor Independence 1b (Gfi1b) Is Important for the Maturation of Erythroid Cells and the Regulation of Embryonic Globin Expression | PLOS ONE

BIOCARTA_EPONFKB_PATHWAY
BIOCARTA_EPONFKB_PATHWAY

GSEA | MSigDB | Help
GSEA | MSigDB | Help

The Molecular Signatures Database Hallmark Gene Set Collection
The Molecular Signatures Database Hallmark Gene Set Collection

Performing pathway enrichment with non-human species - Basepair
Performing pathway enrichment with non-human species - Basepair

BIOCARTA_NO2IL12_PATHWAY
BIOCARTA_NO2IL12_PATHWAY

Msigdb Collection (BioCarta) | Bioz | Ratings For Life-Science Research
Msigdb Collection (BioCarta) | Bioz | Ratings For Life-Science Research

The Molecular Signatures Database Hallmark Gene Set Collection -  ScienceDirect
The Molecular Signatures Database Hallmark Gene Set Collection - ScienceDirect

ShinyGO 0.76
ShinyGO 0.76

A Protocol for Using Gene Set Enrichment Analysis to Identify the  Appropriate Animal Model for Translational Research | Protocol
A Protocol for Using Gene Set Enrichment Analysis to Identify the Appropriate Animal Model for Translational Research | Protocol

Widespread discrepancy in Nnt genotypes and genetic backgrounds complicates  granzyme A and other knockout mouse studies | eLife
Widespread discrepancy in Nnt genotypes and genetic backgrounds complicates granzyme A and other knockout mouse studies | eLife

The Molecular Signatures Database Hallmark Gene Set Collection -  ScienceDirect
The Molecular Signatures Database Hallmark Gene Set Collection - ScienceDirect

Functional analysis
Functional analysis

ToppGene Suite Help
ToppGene Suite Help

msigdb: The molecular signatures database (MSigDB) in R
msigdb: The molecular signatures database (MSigDB) in R

a) The table shows a list of motifs in the MSigDb Transcription Target... |  Download Scientific Diagram
a) The table shows a list of motifs in the MSigDb Transcription Target... | Download Scientific Diagram

Result from the GSEA analysis with the MSigDB gene sets C2 (left) and... |  Download Scientific Diagram
Result from the GSEA analysis with the MSigDB gene sets C2 (left) and... | Download Scientific Diagram

LRcell: detecting the source of differential expression at the sub-cell  type level from bulk RNA-seq data | bioRxiv
LRcell: detecting the source of differential expression at the sub-cell type level from bulk RNA-seq data | bioRxiv

Week9-Functional Annotation
Week9-Functional Annotation

ACE2-lentiviral transduction enables mouse SARS-CoV-2 infection and mapping  of receptor interactions | PLOS Pathogens
ACE2-lentiviral transduction enables mouse SARS-CoV-2 infection and mapping of receptor interactions | PLOS Pathogens

GSEA User Guide
GSEA User Guide

GSEA for neuronal genes in Ins1LKB1KO ( A ) or Ins1AMPKdKO ( B ) mice.... |  Download Scientific Diagram
GSEA for neuronal genes in Ins1LKB1KO ( A ) or Ins1AMPKdKO ( B ) mice.... | Download Scientific Diagram